Cell Annotation Platform
v1
A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
Whole Mouse Brain Taxonomy, Cerebral nuclei neurons
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Whole Mouse Brain Taxonomy, Cerebral nuclei neurons
Main
Summary
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Cell Metadata
cluster
subclass
class
supertype
0994 STR D1 Sema5a Gaba_2
Full Name
0994 STR D1 Sema5a Gaba_2
Closest Ontology Term
direct pathway medium spiny neuron
CL:4023026
Synonyms
Terms that have the same, or nearly the same, meaning as the selected cell type.
unknown
Category
Class of which the cell type is a subclass.
medium spiny neuron
CL:1001474
Ontology Assessment
Disagreements with any aspect of the Cell Ontology.
—
Marker Gene Evidence
Gene markers used by researcher to assign this cell annotation.
Nlrp10
,
Gng2
,
Dscam
Canonical Marker Genes
unknown
Rationale
NA
Inherited from cluster
Set of Labels Description
The finest level of cell type definition in the mouse whole brain taxonomy. Cells within a cluster share similar characteristics and belong to the same supertype.
Annotation Method
manual
Molecular Data
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