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Whole Mouse Brain Taxonomy, 18 TH Glut | CAP
v1
A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
Whole Mouse Brain Taxonomy, 18 TH Glut
Whole Mouse Brain Taxonomy, 18 TH Glut
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Cell Metadata
class
cluster
subclass
supertype
Summary
Thalamic excitatory neurons
Metadata
Dataset Type
Integrated. The file includes an integrated collection of datasets.
Total Cells
115,401
organism
Mus musculus
disease
normal
assay
10x 3' v2
(57,701 cells)
10x 3' v3
(57,700 cells)
tissue
dorsal plus ventral thalamus
(113,729 cells)
hypothalamus
(1,064 cells)
midbrain
(345 cells)
pallidum
(198 cells)
striatum
(63 cells)
hippocampal formation
(2 cells)
Cell Labels
class (1)
115,401 cells
18 TH Glut
115,401
cluster (113)
115,401 cells
2650 TH Prkcd Grin2c Glut_2
8,341
2652 TH Prkcd Grin2c Glut_3
6,319
2651 TH Prkcd Grin2c Glut_3
4,961
2649 TH Prkcd Grin2c Glut_1
4,943
2678 TH Prkcd Grin2c Glut_10
4,168
2616 AV Col27a1 Glut_1
3,865
2621 PVT-PT Ntrk1 Glut_2
3,719
2615 AV Col27a1 Glut_1
3,666
2664 TH Prkcd Grin2c Glut_6
3,192
2635 CM-IAD-CL-PCN Sema5b Glut_1
3,128
2658 TH Prkcd Grin2c Glut_5
3,011
2663 TH Prkcd Grin2c Glut_6
2,917
2648 TH Prkcd Grin2c Glut_1
2,788
2660 TH Prkcd Grin2c Glut_6
2,432
2644 CM-IAD-CL-PCN Sema5b Glut_4
2,408
2639 CM-IAD-CL-PCN Sema5b Glut_2
2,396
2665 TH Prkcd Grin2c Glut_7
1,881
2680 TH Prkcd Grin2c Glut_11
1,608
2655 TH Prkcd Grin2c Glut_5
1,604
2629 PVT-PT Ntrk1 Glut_4
1,465
2636 CM-IAD-CL-PCN Sema5b Glut_1
1,373
2687 TH Prkcd Grin2c Glut_13
1,371
2671 TH Prkcd Grin2c Glut_8
1,301
2681 TH Prkcd Grin2c Glut_12
1,275
2675 TH Prkcd Grin2c Glut_9
1,247
2724 PF Fzd5 Glut_2
1,114
2672 TH Prkcd Grin2c Glut_8
1,055
2623 PVT-PT Ntrk1 Glut_2
1,013
2662 TH Prkcd Grin2c Glut_6
974
2689 TH Prkcd Grin2c Glut_14
942
2674 TH Prkcd Grin2c Glut_9
936
2696 RE-Xi Nox4 Glut_2
892
2673 TH Prkcd Grin2c Glut_8
873
2688 TH Prkcd Grin2c Glut_14
844
2705 MG-POL-SGN Nts Glut_1
815
2698 RE-Xi Nox4 Glut_3
799
2725 PF Fzd5 Glut_2
791
2667 TH Prkcd Grin2c Glut_7
770
2626 PVT-PT Ntrk1 Glut_3
768
2717 PF Fzd5 Glut_1
745
2653 TH Prkcd Grin2c Glut_4
744
2683 TH Prkcd Grin2c Glut_13
730
2654 TH Prkcd Grin2c Glut_4
730
2659 TH Prkcd Grin2c Glut_6
728
2713 PF Fzd5 Glut_1
726
2676 TH Prkcd Grin2c Glut_9
717
2699 RE-Xi Nox4 Glut_3
701
2645 CM-IAD-CL-PCN Sema5b Glut_4
663
2697 RE-Xi Nox4 Glut_2
616
2633 CM-IAD-CL-PCN Sema5b Glut_1
613
2669 TH Prkcd Grin2c Glut_8
609
2657 TH Prkcd Grin2c Glut_5
598
2613 AD Serpinb7 Glut_1
587
2692 RE-Xi Nox4 Glut_1
539
2719 PF Fzd5 Glut_1
521
2624 PVT-PT Ntrk1 Glut_3
510
2661 TH Prkcd Grin2c Glut_6
499
2634 CM-IAD-CL-PCN Sema5b Glut_1
490
2668 TH Prkcd Grin2c Glut_8
482
2631 PVT-PT Ntrk1 Glut_5
480
2709 MG-POL-SGN Nts Glut_2
452
2620 PVT-PT Ntrk1 Glut_2
439
2646 CM-IAD-CL-PCN Sema5b Glut_5
435
2637 CM-IAD-CL-PCN Sema5b Glut_2
427
2695 RE-Xi Nox4 Glut_2
402
2670 TH Prkcd Grin2c Glut_8
393
2656 TH Prkcd Grin2c Glut_5
389
2723 PF Fzd5 Glut_2
385
2643 CM-IAD-CL-PCN Sema5b Glut_4
376
2685 TH Prkcd Grin2c Glut_13
358
2622 PVT-PT Ntrk1 Glut_2
349
2638 CM-IAD-CL-PCN Sema5b Glut_2
346
2691 RE-Xi Nox4 Glut_1
344
2700 RE-Xi Nox4 Glut_3
342
2666 TH Prkcd Grin2c Glut_7
332
2721 PF Fzd5 Glut_2
331
2693 RE-Xi Nox4 Glut_1
330
2684 TH Prkcd Grin2c Glut_13
326
2686 TH Prkcd Grin2c Glut_13
325
2682 TH Prkcd Grin2c Glut_12
324
2706 MG-POL-SGN Nts Glut_1
322
2704 MG-POL-SGN Nts Glut_1
320
2712 PF Fzd5 Glut_1
318
2642 CM-IAD-CL-PCN Sema5b Glut_3
315
2718 PF Fzd5 Glut_1
304
2722 PF Fzd5 Glut_2
302
2679 TH Prkcd Grin2c Glut_11
302
2617 PVT-PT Ntrk1 Glut_1
297
2628 PVT-PT Ntrk1 Glut_4
291
2690 RE-Xi Nox4 Glut_1
288
2619 PVT-PT Ntrk1 Glut_1
273
2640 CM-IAD-CL-PCN Sema5b Glut_3
257
2715 PF Fzd5 Glut_1
245
2641 CM-IAD-CL-PCN Sema5b Glut_3
241
2694 RE-Xi Nox4 Glut_2
214
2720 PF Fzd5 Glut_2
212
2710 PF Fzd5 Glut_1
211
2711 PF Fzd5 Glut_1
201
2716 PF Fzd5 Glut_1
197
2703 RE-Xi Nox4 Glut_4
186
2714 PF Fzd5 Glut_1
185
2627 PVT-PT Ntrk1 Glut_4
181
2702 RE-Xi Nox4 Glut_3
175
2632 PVT-PT Ntrk1 Glut_6
171
2630 PVT-PT Ntrk1 Glut_5
165
2701 RE-Xi Nox4 Glut_3
142
2677 TH Prkcd Grin2c Glut_10
141
2647 CM-IAD-CL-PCN Sema5b Glut_5
136
2614 AD Serpinb7 Glut_1
133
2618 PVT-PT Ntrk1 Glut_1
95
2708 MG-POL-SGN Nts Glut_2
93
2707 MG-POL-SGN Nts Glut_2
48
2625 PVT-PT Ntrk1 Glut_3
42
subclass (8)
115,401 cells
151 TH Prkcd Grin2c Glut
68,480
150 CM-IAD-CL-PCN Sema5b Glut
13,604
149 PVT-PT Ntrk1 Glut
10,258
148 AV Col27a1 Glut
7,531
154 PF Fzd5 Glut
6,788
152 RE-Xi Nox4 Glut
5,970
153 MG-POL-SGN Nts Glut
2,050
147 AD Serpinb7 Glut
720
supertype (35)
115,401 cells
0656 TH Prkcd Grin2c Glut_3
11,280
0659 TH Prkcd Grin2c Glut_6
10,742
0655 TH Prkcd Grin2c Glut_2
8,341
0654 TH Prkcd Grin2c Glut_1
7,731
0642 AV Col27a1 Glut_1
7,531
0649 CM-IAD-CL-PCN Sema5b Glut_1
5,604
0658 TH Prkcd Grin2c Glut_5
5,602
0644 PVT-PT Ntrk1 Glut_2
5,520
0661 TH Prkcd Grin2c Glut_8
4,713
0663 TH Prkcd Grin2c Glut_10
4,309
0674 PF Fzd5 Glut_1
3,653
0652 CM-IAD-CL-PCN Sema5b Glut_4
3,447
0650 CM-IAD-CL-PCN Sema5b Glut_2
3,169
0675 PF Fzd5 Glut_2
3,135
0666 TH Prkcd Grin2c Glut_13
3,110
0660 TH Prkcd Grin2c Glut_7
2,983
0662 TH Prkcd Grin2c Glut_9
2,900
0670 RE-Xi Nox4 Glut_3
2,159
0669 RE-Xi Nox4 Glut_2
2,124
0646 PVT-PT Ntrk1 Glut_4
1,937
0664 TH Prkcd Grin2c Glut_11
1,910
0667 TH Prkcd Grin2c Glut_14
1,786
0665 TH Prkcd Grin2c Glut_12
1,599
0668 RE-Xi Nox4 Glut_1
1,501
0657 TH Prkcd Grin2c Glut_4
1,474
0672 MG-POL-SGN Nts Glut_1
1,457
0645 PVT-PT Ntrk1 Glut_3
1,320
0651 CM-IAD-CL-PCN Sema5b Glut_3
813
0641 AD Serpinb7 Glut_1
720
0643 PVT-PT Ntrk1 Glut_1
665
0647 PVT-PT Ntrk1 Glut_5
645
0673 MG-POL-SGN Nts Glut_2
593
0653 CM-IAD-CL-PCN Sema5b Glut_5
571
0671 RE-Xi Nox4 Glut_4
186
0648 PVT-PT Ntrk1 Glut_6
171
Molecular Data
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