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A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
Whole Mouse Brain Taxonomy, Pallium GABAergic interneurons
Whole Mouse Brain Taxonomy, Pallium GABAergic interneurons
Main
Summary
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Cell Metadata
cluster
subclass
class
supertype
Summary
Pallium GABAergic interneurons, 06 CTX-CGE GABA and 07 CTX-MGE GABA
Metadata
Dataset Type
Integrated. The file includes an integrated collection of datasets.
Total Cells
261,117
organism
Mus musculus
tissue
neocortex
(198,244 cells)
hippocampal formation
(41,730 cells)
cerebral cortex
(9,508 cells)
olfactory cortex
(9,222 cells)
striatum
(1,947 cells)
pallidum
(325 cells)
hypothalamus
(55 cells)
midbrain
(51 cells)
dorsal plus ventral thalamus
(33 cells)
pons
(2 cells)
assay
10x 3' v2
(130,559 cells)
10x 3' v3
(130,558 cells)
disease
normal
Cell Labels
cluster (206)
261,117 cells
0709 Lamp5 Gaba_1
18,391
0708 Lamp5 Gaba_1
10,946
0741 Pvalb Gaba_3
9,691
0754 Pvalb Gaba_8
7,777
0641 Vip Gaba_5
6,490
0645 Vip Gaba_6
6,446
0742 Pvalb Gaba_3
5,882
0710 Lamp5 Gaba_1
5,178
0726 Lamp5 Lhx6 Gaba_1
4,464
0779 Sst Gaba_4
4,421
0718 Lamp5 Gaba_2
4,139
0639 Vip Gaba_4
3,949
0803 Sst Gaba_10
3,849
0663 Vip Gaba_12
3,824
0643 Vip Gaba_5
3,618
0780 Sst Gaba_4
3,523
0740 Pvalb Gaba_3
3,366
0733 Pvalb chandelier Gaba_1
3,161
0624 Vip Gaba_1
3,065
0632 Vip Gaba_3
2,991
0777 Sst Gaba_4
2,956
0642 Vip Gaba_5
2,881
0797 Sst Gaba_8
2,881
0748 Pvalb Gaba_5
2,814
0707 Lamp5 Gaba_1
2,745
0661 Vip Gaba_11
2,745
0778 Sst Gaba_4
2,675
0792 Sst Gaba_7
2,568
0724 Lamp5 Lhx6 Gaba_1
2,443
0811 Sst Gaba_13
2,426
0623 Vip Gaba_1
2,375
0676 Sncg Gaba_3
2,268
0633 Vip Gaba_3
2,237
0747 Pvalb Gaba_4
2,174
0711 Lamp5 Gaba_1
2,106
0722 Lamp5 Gaba_4
2,085
0682 Sncg Gaba_6
1,928
0678 Sncg Gaba_4
1,900
0674 Sncg Gaba_3
1,850
0634 Vip Gaba_3
1,780
0744 Pvalb Gaba_4
1,751
0810 Sst Gaba_13
1,638
0627 Vip Gaba_2
1,624
0758 Sst Gaba_1
1,516
0719 Lamp5 Gaba_3
1,460
0820 Sst Gaba_16
1,454
0735 Pvalb Gaba_1
1,425
0677 Sncg Gaba_3
1,422
0628 Vip Gaba_2
1,401
0814 Sst Gaba_14
1,359
0805 Sst Gaba_11
1,345
0720 Lamp5 Gaba_3
1,345
0817 Sst Gaba_15
1,336
0806 Sst Gaba_11
1,332
0761 Sst Gaba_1
1,324
0625 Vip Gaba_1
1,307
0809 Sst Gaba_12
1,300
0781 Sst Gaba_5
1,277
0629 Vip Gaba_2
1,271
0783 Sst Gaba_5
1,228
0743 Pvalb Gaba_4
1,224
0652 Vip Gaba_8
1,221
0662 Vip Gaba_12
1,214
0804 Sst Gaba_10
1,203
0760 Sst Gaba_1
1,170
0673 Sncg Gaba_3
1,168
0721 Lamp5 Gaba_3
1,144
0818 Sst Gaba_16
1,138
0671 Sncg Gaba_2
1,106
0802 Sst Gaba_10
1,089
0638 Vip Gaba_4
1,046
0644 Vip Gaba_5
1,039
0716 Lamp5 Gaba_2
1,035
0801 Sst Gaba_9
1,026
0759 Sst Gaba_1
998
0660 Vip Gaba_11
985
0798 Sst Gaba_9
967
0713 Lamp5 Gaba_1
959
0757 Sst Gaba_1
956
0731 Lamp5 Lhx6 Gaba_1
934
0752 Pvalb Gaba_6
931
0795 Sst Gaba_8
925
0821 Sst Gaba_16
924
0756 Sst Gaba_1
911
0784 Sst Gaba_5
910
0815 Sst Gaba_15
906
0745 Pvalb Gaba_4
835
0684 Sncg Gaba_8
807
0819 Sst Gaba_16
806
0734 Pvalb Gaba_1
795
0799 Sst Gaba_9
790
0751 Pvalb Gaba_6
780
0669 Sncg Gaba_2
769
0630 Vip Gaba_2
761
0776 Sst Gaba_4
760
0636 Vip Gaba_4
750
0647 Vip Gaba_6
750
0672 Sncg Gaba_3
736
0746 Pvalb Gaba_4
709
0812 Sst Gaba_14
696
0666 Sncg Gaba_1
694
0646 Vip Gaba_6
691
0640 Vip Gaba_5
685
0665 Sncg Gaba_1
674
0655 Vip Gaba_9
653
0631 Vip Gaba_2
653
0816 Sst Gaba_15
651
0800 Sst Gaba_9
649
0714 Lamp5 Gaba_2
636
0729 Lamp5 Lhx6 Gaba_1
626
0717 Lamp5 Gaba_2
620
0793 Sst Gaba_7
618
0715 Lamp5 Gaba_2
610
0648 Vip Gaba_6
587
0782 Sst Gaba_5
584
0753 Pvalb Gaba_7
567
0823 Sst Gaba_17
556
0706 Lamp5 Gaba_1
556
0794 Sst Gaba_7
554
0686 RHP-COA Ndnf Gaba_1
542
0667 Sncg Gaba_1
525
0635 Vip Gaba_3
518
0650 Vip Gaba_7
504
0712 Lamp5 Gaba_1
481
0807 Sst Gaba_12
481
0825 Sst Gaba_18
476
0670 Sncg Gaba_2
474
0771 Sst Gaba_3
462
0683 Sncg Gaba_7
429
0738 Pvalb Gaba_2
425
0689 RHP-COA Ndnf Gaba_1
410
0649 Vip Gaba_7
409
0813 Sst Gaba_14
409
0770 Sst Gaba_3
404
0764 Sst Gaba_2
400
0680 Sncg Gaba_5
396
0679 Sncg Gaba_5
378
0685 Sncg Gaba_8
369
0808 Sst Gaba_12
345
0827 Sst Gaba_19
343
0796 Sst Gaba_8
339
0637 Vip Gaba_4
338
0769 Sst Gaba_3
334
0736 Pvalb Gaba_1
326
0828 Sst Gaba_19
320
0657 Vip Gaba_9
310
0732 Pvalb chandelier Gaba_1
309
0762 Sst Gaba_2
296
0675 Sncg Gaba_3
293
0681 Sncg Gaba_5
291
0653 Vip Gaba_8
290
0654 Vip Gaba_9
286
0822 Sst Gaba_17
264
0626 Vip Gaba_1
251
0755 Pvalb Gaba_9
241
0687 RHP-COA Ndnf Gaba_1
236
0789 Sst Gaba_6
222
0765 Sst Gaba_2
218
0725 Lamp5 Lhx6 Gaba_1
212
0704 RHP-COA Ndnf Gaba_6
211
0749 Pvalb Gaba_5
205
0656 Vip Gaba_9
192
0772 Sst Gaba_3
190
0766 Sst Gaba_2
189
0668 Sncg Gaba_1
184
0693 RHP-COA Ndnf Gaba_3
182
0664 Sncg Gaba_1
179
0695 RHP-COA Ndnf Gaba_3
178
0688 RHP-COA Ndnf Gaba_1
177
0750 Pvalb Gaba_5
171
0737 Pvalb Gaba_2
170
0651 Vip Gaba_7
170
0694 RHP-COA Ndnf Gaba_3
169
0826 Sst Gaba_18
168
0696 RHP-COA Ndnf Gaba_3
166
0773 Sst Gaba_3
156
0690 RHP-COA Ndnf Gaba_2
148
0774 Sst Gaba_3
145
0775 Sst Gaba_3
143
0824 Sst Gaba_17
136
0786 Sst Gaba_6
132
0691 RHP-COA Ndnf Gaba_2
124
0730 Lamp5 Lhx6 Gaba_1
112
0701 RHP-COA Ndnf Gaba_5
111
0767 Sst Gaba_3
104
0791 Sst Gaba_6
100
0788 Sst Gaba_6
98
0702 RHP-COA Ndnf Gaba_5
94
0703 RHP-COA Ndnf Gaba_5
90
0699 RHP-COA Ndnf Gaba_5
89
0697 RHP-COA Ndnf Gaba_4
87
0763 Sst Gaba_2
80
0698 RHP-COA Ndnf Gaba_4
80
0659 Vip Gaba_10
77
0768 Sst Gaba_3
66
0787 Sst Gaba_6
65
0692 RHP-COA Ndnf Gaba_2
64
0728 Lamp5 Lhx6 Gaba_1
63
0658 Vip Gaba_10
63
0705 RHP-COA Ndnf Gaba_6
61
0727 Lamp5 Lhx6 Gaba_1
59
0790 Sst Gaba_6
57
0739 Pvalb Gaba_2
55
0785 Sst Gaba_6
51
0723 Lamp5 Gaba_4
48
0700 RHP-COA Ndnf Gaba_5
42
subclass (8)
261,117 cells
053 Sst Gaba
67,388
046 Vip Gaba
62,447
049 Lamp5 Gaba
54,484
052 Pvalb Gaba
42,314
047 Sncg Gaba
18,840
050 Lamp5 Lhx6 Gaba
8,913
051 Pvalb chandelier Gaba
3,470
048 RHP-COA Ndnf Gaba
3,261
class (2)
261,117 cells
06 CTX-CGE GABA
139,032
07 CTX-MGE GABA
122,085
supertype (60)
261,117 cells
0199 Lamp5 Gaba_1
41,362
0207 Pvalb Gaba_3
18,939
0177 Vip Gaba_5
14,713
0217 Sst Gaba_4
14,335
0203 Lamp5 Lhx6 Gaba_1
8,913
0178 Vip Gaba_6
8,474
0212 Pvalb Gaba_8
7,777
0187 Sncg Gaba_3
7,737
0175 Vip Gaba_3
7,526
0200 Lamp5 Gaba_2
7,040
0173 Vip Gaba_1
6,998
0214 Sst Gaba_1
6,875
0208 Pvalb Gaba_4
6,693
0223 Sst Gaba_10
6,141
0176 Vip Gaba_4
6,083
0174 Vip Gaba_2
5,710
0184 Vip Gaba_12
5,038
0229 Sst Gaba_16
4,322
0221 Sst Gaba_8
4,145
0226 Sst Gaba_13
4,064
0218 Sst Gaba_5
3,999
0201 Lamp5 Gaba_3
3,949
0220 Sst Gaba_7
3,740
0183 Vip Gaba_11
3,730
0204 Pvalb chandelier Gaba_1
3,470
0222 Sst Gaba_9
3,432
0209 Pvalb Gaba_5
3,190
0228 Sst Gaba_15
2,893
0224 Sst Gaba_11
2,677
0205 Pvalb Gaba_1
2,546
0227 Sst Gaba_14
2,464
0186 Sncg Gaba_2
2,349
0185 Sncg Gaba_1
2,256
0202 Lamp5 Gaba_4
2,133
0225 Sst Gaba_12
2,126
0216 Sst Gaba_3
2,004
0190 Sncg Gaba_6
1,928
0188 Sncg Gaba_4
1,900
0210 Pvalb Gaba_6
1,711
0180 Vip Gaba_8
1,511
0181 Vip Gaba_9
1,441
0193 RHP-COA Ndnf Gaba_1
1,365
0215 Sst Gaba_2
1,183
0192 Sncg Gaba_8
1,176
0179 Vip Gaba_7
1,083
0189 Sncg Gaba_5
1,065
0230 Sst Gaba_17
956
0219 Sst Gaba_6
725
0195 RHP-COA Ndnf Gaba_3
695
0232 Sst Gaba_19
663
0206 Pvalb Gaba_2
650
0231 Sst Gaba_18
644
0211 Pvalb Gaba_7
567
0191 Sncg Gaba_7
429
0197 RHP-COA Ndnf Gaba_5
426
0194 RHP-COA Ndnf Gaba_2
336
0198 RHP-COA Ndnf Gaba_6
272
0213 Pvalb Gaba_9
241
0196 RHP-COA Ndnf Gaba_4
167
0182 Vip Gaba_10
140
Molecular Data
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