Cell Annotation Platform
v1
A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
Whole Mouse Brain Taxonomy, non_neuronal
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Whole Mouse Brain Taxonomy, non_neuronal
Main
Summary
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Cell Metadata
class
subclass
supertype
cluster
Summary
Non-neuronal cells
Metadata
Dataset Type
Integrated. The file includes an integrated collection of datasets.
Total Cells
1,085,569
organism
Mus musculus
tissue
midbrain
(175,670 cells)
neocortex
(165,721 cells)
medulla oblongata
(109,246 cells)
hippocampal formation
(103,440 cells)
pons
(103,044 cells)
striatum
(97,731 cells)
dorsal plus ventral thalamus
(93,958 cells)
hypothalamus
(79,086 cells)
pallidum
(50,156 cells)
cerebral cortex
(46,753 cells)
olfactory cortex
(45,532 cells)
cerebellum
(15,232 cells)
assay
10x 3' v2
(542,786 cells)
10x 3' v3
(542,783 cells)
disease
normal
Cell Labels
class (6)
1,085,569 cells
31 OPC-Oligo
545,179
30 Astro-Epen
308,681
33 Vascular
137,493
34 Immune
92,580
32 OEC
1,132
25 Pineal Glut
504
subclass (24)
1,085,569 cells
327 Oligo NN
422,574
319 Astro-TE NN
154,311
318 Astro-NT NN
140,669
326 OPC NN
122,605
333 Endo NN
88,011
334 Microglia NN
86,232
331 Peri NN
24,907
332 SMC NN
14,614
330 VLMC NN
9,104
335 BAM NN
5,626
316 Bergmann NN
3,321
323 Ependymal NN
3,259
320 Astro-OLF NN
2,486
317 Astro-CB NN
1,716
321 Astroependymal NN
1,232
328 OEC NN
1,132
322 Tanycyte NN
1,072
329 ABC NN
857
262 Pineal Crx Glut
504
325 CHOR NN
476
338 Lymphoid NN
404
337 DC NN
285
324 Hypendymal NN
139
336 Monocytes NN
33
supertype (46)
1,085,569 cells
1184 MOL NN_4
395,554
1163 Astro-TE NN_3
146,806
1160 Astro-NT NN_2
139,205
1179 OPC NN_1
121,667
1193 Endo NN_1
88,011
1194 Microglia NN_1
86,232
1191 Peri NN_1
24,907
1181 COP NN_1
16,063
1192 SMC NN_1
14,614
1183 MFOL NN_3
7,528
1195 BAM NN_1
5,626
1188 VLMC NN_2
5,508
1161 Astro-TE NN_1
4,763
1182 NFOL NN_2
3,429
1187 VLMC NN_1
3,407
1157 Bergmann NN_1
3,321
1175 Ependymal NN_1
2,981
1158 Astro-CB NN_1
1,716
1159 Astro-NT NN_1
1,464
1165 Astro-TE NN_5
1,337
1166 Astro-OLF NN_1
1,193
1185 OEC NN_1
1,132
1164 Astro-TE NN_4
982
1180 OPC NN_2
938
1173 Tanycyte NN_2
896
1186 ABC NN_1
857
1168 Astro-OLF NN_3
674
1169 Astroependymal NN_1
654
1167 Astro-OLF NN_2
619
1171 Astroependymal NN_3
512
1030 Pineal Crx Glut_1
504
1178 CHOR NN_1
476
1162 Astro-TE NN_2
423
1197 DC NN_1
285
1176 Ependymal NN_2
278
1201 T cells NN_4
199
1177 Hypendymal NN_1
139
1172 Tanycyte NN_1
135
1200 NK cells NN_3
132
1189 VLMC NN_3
113
1190 VLMC NN_4
76
1170 Astroependymal NN_2
66
1198 B cells NN_1
45
1174 Tanycyte NN_3
41
1196 Monocytes NN_1
33
1199 ILC NN_2
28
cluster (118)
1,085,569 cells
5285 MOL NN_4
264,669
5225 Astro-TE NN_3
131,046
5284 MOL NN_4
120,642
5269 OPC NN_1
117,304
5214 Astro-NT NN_2
108,101
5312 Microglia NN_1
86,232
5310 Endo NN_1
48,562
5311 Endo NN_1
30,159
5304 Peri NN_1
24,403
5216 Astro-NT NN_2
20,018
5215 Astro-NT NN_2
10,325
5307 SMC NN_1
9,689
5309 Endo NN_1
9,290
5226 Astro-TE NN_3
7,734
5227 Astro-TE NN_3
7,503
5272 COP NN_1
7,130
5282 MFOL NN_3
6,615
5273 COP NN_1
5,971
5286 MOL NN_4
5,449
5301 VLMC NN_2
5,194
5306 SMC NN_1
4,502
5287 MOL NN_4
4,007
5206 Bergmann NN_1
3,321
5314 BAM NN_1
2,814
5313 BAM NN_1
2,812
5218 Astro-TE NN_1
2,759
5298 VLMC NN_1
2,441
5270 OPC NN_1
2,328
5275 COP NN_1
2,168
5280 NFOL NN_2
1,793
5207 Astro-CB NN_1
1,716
5256 Ependymal NN_1
1,519
5268 OPC NN_1
1,342
5221 Astro-TE NN_1
1,225
5231 Astro-OLF NN_1
991
5228 Astro-TE NN_4
982
5271 OPC NN_2
938
5283 MFOL NN_3
913
5279 NFOL NN_2
913
5288 MOL NN_4
787
5229 Astro-TE NN_5
773
5217 Astro-NT NN_2
761
5209 Astro-NT NN_1
718
5281 NFOL NN_2
708
5219 Astro-TE NN_1
647
5293 ABC NN_1
613
5291 OEC NN_1
571
5230 Astro-TE NN_5
564
5297 VLMC NN_1
539
5224 Astro-TE NN_3
523
5305 Peri NN_1
504
4606 Pineal Crx Glut_1
504
5266 OPC NN_1
483
5276 COP NN_1
429
5235 Astro-OLF NN_3
424
5308 SMC NN_1
423
5222 Astro-TE NN_2
413
5257 Ependymal NN_1
402
5233 Astro-OLF NN_2
384
5290 OEC NN_1
341
5247 Tanycyte NN_2
331
5237 Astroependymal NN_1
329
5299 VLMC NN_1
316
5258 Ependymal NN_1
315
5300 VLMC NN_2
314
5212 Astro-NT NN_1
307
5264 CHOR NN_1
305
5251 Ependymal NN_1
301
5241 Astroependymal NN_3
297
5239 Astroependymal NN_1
268
5236 Astro-OLF NN_3
250
5249 Tanycyte NN_2
237
5234 Astro-OLF NN_2
235
5242 Astroependymal NN_3
215
5267 OPC NN_1
210
5232 Astro-OLF NN_1
202
5322 T cells NN_4
199
5259 Ependymal NN_1
198
5245 Tanycyte NN_2
198
5277 COP NN_1
193
5208 Astro-NT NN_1
192
5262 Ependymal NN_2
185
5318 DC NN_1
182
5295 ABC NN_1
173
5274 COP NN_1
172
5265 CHOR NN_1
171
5210 Astro-NT NN_1
140
5263 Hypendymal NN_1
139
5321 NK cells NN_3
132
5220 Astro-TE NN_1
132
5289 OEC NN_1
119
5302 VLMC NN_3
113
5296 VLMC NN_1
111
5292 OEC NN_1
101
5243 Tanycyte NN_1
97
5246 Tanycyte NN_2
94
5252 Ependymal NN_1
90
5211 Astro-NT NN_1
89
5255 Ependymal NN_1
85
5303 VLMC NN_4
76
5317 DC NN_1
73
5294 ABC NN_1
71
5240 Astroependymal NN_2
66
5238 Astroependymal NN_1
57
5261 Ependymal NN_2
52
5253 Ependymal NN_1
47
5319 B cells NN_1
45
5250 Tanycyte NN_3
41
5260 Ependymal NN_2
41
5244 Tanycyte NN_1
38
5248 Tanycyte NN_2
36
5315 Monocytes NN_1
33
5316 DC NN_1
30
5320 ILC NN_2
28
5254 Ependymal NN_1
24
5213 Astro-NT NN_1
18
5278 NFOL NN_2
15
5223 Astro-TE NN_2
10
Molecular Data
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