HCA Gut Cell Atlas v1 Epithelial Lineage

Main

Cell Metadata

Cycling TA

Full Name: Transiently amplifying cells with predominant cycling signature
Closest Ontology Term: transit amplifying cellCL:0009010
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: transit amplifying cellCL:0009010
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: This may be redundant with the overall TA label. Maybe we should collapse these
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: MCM5, TOP2A, CCNA2, PCLAF, HELLS, PCNA, MKI67
Canonical Marker Genes: MKI67, TOP2A, CCNA2
Rationale: TA with ONLY cell cycle markers

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: algorithmic

Main

Cell Metadata

Full Name: Transiently amplifying cells with predominant cycling signature
Closest Ontology Term: transit amplifying cellCL:0009010
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: transit amplifying cellCL:0009010
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: This may be redundant with the overall TA label. Maybe we should collapse these
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: MCM5, TOP2A, CCNA2, PCLAF, HELLS, PCNA, MKI67
Canonical Marker Genes: MKI67, TOP2A, CCNA2
Rationale: TA with ONLY cell cycle markers

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: algorithmic