HCA Gut Cell Atlas v1 Epithelial Lineage

Main

Cell Metadata

Absorptive TA

Full Name: Transiently amplifying cells with predominant absorptive signature
Closest Ontology Term: transit amplifying cellCL:0009010
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: transit amplifying cellCL:0009010
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: Since absorptive epithelial cells lay on a continuum, it's not clear if or how we should have subdivisions of epithelial subtypes. We argue it could be useful for high-res compositional analysis to have some type of subdivision.
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: NOTCH1, EDN1
Canonical Marker Genes: NOTCH1, EDN1, ALDOB
Rationale: NOTCH1 and low expression of absorptive markers such as FABP or ALDOB show an early bias towards absorptive lineage

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: algorithmic

Main

Cell Metadata

Full Name: Transiently amplifying cells with predominant absorptive signature
Closest Ontology Term: transit amplifying cellCL:0009010
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: transit amplifying cellCL:0009010
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: Since absorptive epithelial cells lay on a continuum, it's not clear if or how we should have subdivisions of epithelial subtypes. We argue it could be useful for high-res compositional analysis to have some type of subdivision.
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: NOTCH1, EDN1
Canonical Marker Genes: NOTCH1, EDN1, ALDOB
Rationale: NOTCH1 and low expression of absorptive markers such as FABP or ALDOB show an early bias towards absorptive lineage

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: algorithmic