HCA Gut Cell Atlas v1 Epithelial Lineage

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Cell Metadata

Enteroendocrine Cells (EEC)

Ontology Term: enteroendocrine cellCL:0000164
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: epithelial cellCL:0000066
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CHGA, CHGB, NEUROD1, PCSK1N, FXYD3, CPE, SCG5, CA2, SLC26A2, SLC4A4
Canonical Marker Genes: CHGA, CHGB, NEUROD1
Rationale: This is the broader term for EEC when a subtype could not be identified. These are identified by CHGA and CHGB, and their canonical differentiation marker NEUROD1.
Rationale DOI: 10.1038/s41467-021-27901-5

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: algorithmic

Ontology Term: enteroendocrine cellCL:0000164
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: epithelial cellCL:0000066
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CHGA, CHGB, NEUROD1, PCSK1N, FXYD3, CPE, SCG5, CA2, SLC26A2, SLC4A4
Canonical Marker Genes: CHGA, CHGB, NEUROD1
Rationale: This is the broader term for EEC when a subtype could not be identified. These are identified by CHGA and CHGB, and their canonical differentiation marker NEUROD1.
Rationale DOI: 10.1038/s41467-021-27901-5

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: algorithmic