HCA Gut Cell Atlas v1 Lymphoid Lineage

Main

Cell Metadata

T Cycling

Ontology Term: cycling T cellCL:4033069
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: proliferating T cell
Category Class of which the cell type is a subclass.: T cellCL:0000084
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: MKI67, STMN1, TOP2A
Canonical Marker Genes: MKI67, STMN1, TOP2A
Rationale: Cycling T cells were annotated based on STMN1, MKI67 and other cell cycle genes alongside a T lineage background, including TRAC

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: 1.3.2
Algorithm URL: https://github.com/scverse/scvi-tools

Main

Cell Metadata

Ontology Term: cycling T cellCL:4033069
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: proliferating T cell
Category Class of which the cell type is a subclass.: T cellCL:0000084
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: MKI67, STMN1, TOP2A
Canonical Marker Genes: MKI67, STMN1, TOP2A
Rationale: Cycling T cells were annotated based on STMN1, MKI67 and other cell cycle genes alongside a T lineage background, including TRAC

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: 1.3.2
Algorithm URL: https://github.com/scverse/scvi-tools