HCA Gut Cell Atlas v1 Lymphoid Lineage

B Memory

Ontology Term

memory B cellCL:0000787

Synonyms

Terms that have the same, or nearly the same, meaning as the selected cell type.

memory B cell, Bmem

Category

Class of which the cell type is a subclass.

B cellCL:0000236

Ontology Assessment

Disagreements with any aspect of the Cell Ontology.

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Marker Gene Evidence

Gene markers used by researcher to assign this cell annotation.

CD69, SELL, CD27, HLA-DRA

Canonical Marker Genes

CD27, CD80, CD86

Rationale

CD27, HLA-DRA, SELL, and CD69 separated memory B cells from other B subsets

Inherited from Prelim annotation

Set of Labels Description

Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering

Annotation Method

both

Algorithm Name

scVI

Algorithm Version

1.3.2

Algorithm URL

https://github.com/scverse/scvi-tools