HCA Gut Cell Atlas v1 Lymphoid Lineage

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Cell Metadata

ILC2

Ontology Term: group 2 innate lymphoid cell, humanCL:0001081
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: ILC2
Category Class of which the cell type is a subclass.: innate lymphoid cellCL:0001065
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CRTH2, GATA3, PTGDR2, HPGDS, IL1RL1, KRT1
Canonical Marker Genes: GATA3, IL1RL1, KLRB1
Rationale: ST2 is found in one subcluster of ~1000 cells among other ILC clusters, pointing to ILC2. 16_0 could also be ILC2 due to ST2 expression

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: 1.3.2
Algorithm URL: https://github.com/scverse/scvi-tools

Ontology Term: group 2 innate lymphoid cell, humanCL:0001081
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: ILC2
Category Class of which the cell type is a subclass.: innate lymphoid cellCL:0001065
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CRTH2, GATA3, PTGDR2, HPGDS, IL1RL1, KRT1
Canonical Marker Genes: GATA3, IL1RL1, KLRB1
Rationale: ST2 is found in one subcluster of ~1000 cells among other ILC clusters, pointing to ILC2. 16_0 could also be ILC2 due to ST2 expression

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: 1.3.2
Algorithm URL: https://github.com/scverse/scvi-tools