HCA Gut Cell Atlas v1 Lymphoid Lineage

B Cycling

Ontology Term

cycling B cellCL:4033068

Synonyms

Terms that have the same, or nearly the same, meaning as the selected cell type.

cycling B cells

Category

Class of which the cell type is a subclass.

B cellCL:0000236

Ontology Assessment

Disagreements with any aspect of the Cell Ontology.

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Marker Gene Evidence

Gene markers used by researcher to assign this cell annotation.

MKI67, HMGB2, BCL6, TUBA1A

Canonical Marker Genes

MKI67, HMGB2, TOP2A

Rationale

B cells (HLA, CD79) with clear STMN1 and other cell cycle signal

Inherited from Prelim annotation

Set of Labels Description

Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering

Annotation Method

both

Algorithm Name

scVI

Algorithm Version

1.3.2

Algorithm URL

https://github.com/scverse/scvi-tools