HCA Gut Cell Atlas v1 Lymphoid Lineage

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Cell Metadata

Plasma Cells

Ontology Term: plasma cellCL:0000786
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: plasma cells
Category Class of which the cell type is a subclass.: B cellCL:0000236
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: JCHAIN, IG* genes
Canonical Marker Genes: JCHAIN, IG* genes
Rationale: JCHAIN, MZB1, SSR4, and IG*

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: 1.3.2
Algorithm URL: https://github.com/scverse/scvi-tools

Ontology Term: plasma cellCL:0000786
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: plasma cells
Category Class of which the cell type is a subclass.: B cellCL:0000236
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: JCHAIN, IG* genes
Canonical Marker Genes: JCHAIN, IG* genes
Rationale: JCHAIN, MZB1, SSR4, and IG*

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: 1.3.2
Algorithm URL: https://github.com/scverse/scvi-tools