HCA Gut Cell Atlas v1 Lymphoid Lineage

Main

Cell Metadata

T MAIT

Ontology Term: mucosal-associated invariant T cellCL:0000940
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: MAIT cell
Category Class of which the cell type is a subclass.: mature alpha-beta T cellCL:0000791
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: LGALS3, ZBTB16, TRAV1-2, TRAJ33
Canonical Marker Genes: TRAV1-2, KLRB1, ZBTB16
Rationale: This small subcluster uniquely clearly expressed the TRAV1-2 MAIT TCR marker

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: 1.3.2
Algorithm URL: https://github.com/scverse/scvi-tools

Main

Cell Metadata

Ontology Term: mucosal-associated invariant T cellCL:0000940
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: MAIT cell
Category Class of which the cell type is a subclass.: mature alpha-beta T cellCL:0000791
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: LGALS3, ZBTB16, TRAV1-2, TRAJ33
Canonical Marker Genes: TRAV1-2, KLRB1, ZBTB16
Rationale: This small subcluster uniquely clearly expressed the TRAV1-2 MAIT TCR marker

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: 1.3.2
Algorithm URL: https://github.com/scverse/scvi-tools