HCA Gut Cell Atlas v1 Lymphoid Lineage

Main

Cell Metadata

doublets

Full Name: NA
Closest Ontology Term: NA
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: NA
Category Class of which the cell type is a subclass.: NA
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: NA
Canonical Marker Genes: NA
Rationale: A Cell Annotation Platform (CAP) term used to identify a row in a “cell by gene” table that appears to contain combined data from a pair of cells rather than data from one cell and should therefore be discarded.

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: 1.3.2
Algorithm URL: https://github.com/scverse/scvi-tools

Full Name: NA
Closest Ontology Term: NA
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: NA
Category Class of which the cell type is a subclass.: NA
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: NA
Canonical Marker Genes: NA
Rationale: A Cell Annotation Platform (CAP) term used to identify a row in a “cell by gene” table that appears to contain combined data from a pair of cells rather than data from one cell and should therefore be discarded.

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: 1.3.2
Algorithm URL: https://github.com/scverse/scvi-tools