HCA Gut Cell Atlas v1 Myeloid Lineage

DC cDC2

Ontology Term

CD11b-positive dendritic cellCL:0002465

Synonyms

Terms that have the same, or nearly the same, meaning as the selected cell type.

cDC2

Category

Class of which the cell type is a subclass.

dendritic cellCL:0000451

Ontology Assessment

Disagreements with any aspect of the Cell Ontology.

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Marker Gene Evidence

Gene markers used by researcher to assign this cell annotation.

CD1C, TCTN3, FCER1A, CLEC10A, SPI1, SIRPA

Canonical Marker Genes

CD1C, FCER1A, CLEC10A

Rationale

CD1C, CLEC10A, FCER1A, SIRPA, define antigen presenting type 2 conventional dendritic cells with CD11b positive identity and non crosspresenting functions

Rationale DOI

10.1126/science.aah4573; 10.1016/j.cell.2019.06.029

Inherited from Prelim annotation

Set of Labels Description

Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering

Annotation Method

both

Algorithm Name

scVI

Algorithm Version

1.3.2

Algorithm URL

https://github.com/scverse/scvi-tools