HCA Gut Cell Atlas v1 Myeloid Lineage

• v1 Integrated Human Gut Cell Atlas
• HCA Gut Cell Atlas v1 Myeloid Lineage

Macrophages M2

Ontology Term

alternatively activated macrophageCL:0000890

Synonyms

Terms that have the same, or nearly the same, meaning as the selected cell type.

M2 macrophages

Category

Class of which the cell type is a subclass.

macrophageCL:0000235

Ontology Assessment

Disagreements with any aspect of the Cell Ontology.

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Marker Gene Evidence

Gene markers used by researcher to assign this cell annotation.

CD209, CD163L1, FOLR2, MRC1

Canonical Marker Genes

MRC1 (CD206), FOLR2, CD163L1

Rationale

Expresses MRC1 (CD206), FOLR2, CD163L1, CD209, and other alternative activation metabolic genes, marking tissue repair and IL4/IL13 responsive programs

Rationale DOI

10.1016/j.cell.2019.06.029

Inherited from Prelim annotation

Set of Labels Description

Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering

Annotation Method

both

Algorithm Name

scVI

Algorithm Version

1.3.2

Algorithm URL

https://github.com/scverse/scvi-tools