HCA Gut Cell Atlas v1 Myeloid Lineage

DC Monocyte derived dendritic cell (MO DC)

Ontology Term

monocyte-derived dendritic cellCL:0011031

Synonyms

Terms that have the same, or nearly the same, meaning as the selected cell type.

MDDC cell

Category

Class of which the cell type is a subclass.

dendritic cellCL:0000451

Ontology Assessment

Disagreements with any aspect of the Cell Ontology.

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Marker Gene Evidence

Gene markers used by researcher to assign this cell annotation.

MSR1, NPR2

Canonical Marker Genes

MSR1, CD1A, CCR2

Rationale

Shows MSR1, NPR2, and monocyte-to-DC transition markers, defining monocyte-derived dendritic cells arising under inflammatory differentiation

Rationale DOI

10.1016/j.cell.2019.06.029

Inherited from Prelim annotation

Set of Labels Description

Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering

Annotation Method

both

Algorithm Name

scVI

Algorithm Version

1.3.2

Algorithm URL

https://github.com/scverse/scvi-tools