HCA Gut Cell Atlas v1 Stromal Lineage

Smooth Muscle Cells (SMC)

Ontology Term

smooth muscle cellCL:0000192

Synonyms

Terms that have the same, or nearly the same, meaning as the selected cell type.

unknown

Category

Class of which the cell type is a subclass.

stromal cellCL:0000499

Ontology Assessment

Disagreements with any aspect of the Cell Ontology.

—

Marker Gene Evidence

Gene markers used by researcher to assign this cell annotation.

DES, TAGLN, MYH11, ACTG2

Canonical Marker Genes

MYH11, ACTG2, TAGLN

Rationale

Expresses DES, TAGLN, MYH11, ACTG2 consistent with visceral smooth muscle layers of gut wall (muscularis propria/longitudinal and circular layers).

Inherited from Prelim annotation

Set of Labels Description

Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering

Annotation Method

both

Algorithm Name

scVI

Algorithm Version

1.3.2

Algorithm URL

https://github.com/scverse/scvi-tools