HCA Gut Cell Atlas v1 Stromal Lineage

Main

Cell Metadata

vascular endothelial Post arteriole capillary (PAC)

Ontology Term: post-arteriole capillary cellCL:4047029
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: capillary endothelial cellCL:0002144
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: RGCC, FCN3
Canonical Marker Genes: RGCC, FCN3, RBP7
Rationale: RGCC and FCN3, distinguishing it from pre venule capillaries and venules in gut vasculature.

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: 1.3.2
Algorithm URL: https://github.com/scverse/scvi-tools

Main

Cell Metadata

Ontology Term: post-arteriole capillary cellCL:4047029
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: capillary endothelial cellCL:0002144
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: RGCC, FCN3
Canonical Marker Genes: RGCC, FCN3, RBP7
Rationale: RGCC and FCN3, distinguishing it from pre venule capillaries and venules in gut vasculature.

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: 1.3.2
Algorithm URL: https://github.com/scverse/scvi-tools