HCA Gut Cell Atlas v1 Stromal Lineage

Main

Cell Metadata

Pericytes Secretory

Ontology Term: secretory pericyteCL:4047032
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: pericyteCL:0000669
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: MUSTN1, PLN
Canonical Marker Genes: MUSTN1, PLN, COL15A1
Rationale: MUSTN1 and PLN were used to annotate pericytes with secretory program, two putative paracrine factors

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: 1.3.2
Algorithm URL: https://github.com/scverse/scvi-tools

Ontology Term: secretory pericyteCL:4047032
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: pericyteCL:0000669
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: MUSTN1, PLN
Canonical Marker Genes: MUSTN1, PLN, COL15A1
Rationale: MUSTN1 and PLN were used to annotate pericytes with secretory program, two putative paracrine factors

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: 1.3.2
Algorithm URL: https://github.com/scverse/scvi-tools