• v1 Integrated Human Gut Cell Atlas

vascular endothelial Lymphatic

Ontology Term

endothelial cell of lymphatic vesselCL:0002138

Synonyms

Terms that have the same, or nearly the same, meaning as the selected cell type.

unknown

Category

Class of which the cell type is a subclass.

endothelial cellCL:0000115

Ontology Assessment

Disagreements with any aspect of the Cell Ontology.

—

Marker Gene Evidence

Gene markers used by researcher to assign this cell annotation.

LYVE1, PROX1, MMRN1, MRC1

Canonical Marker Genes

LYVE1, PROX1, PDPN

Rationale

Lymphatic endothelial cells are here defined by LYVE1, PROX1, MMRN1 and MRC1 and form multiple clusters (Stroma_13_1–13_5) that are present across many datasets, including immune-interacting states.

Inherited from Prelim annotation

Set of Labels Description

Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering

Annotation Method

both

Algorithm Name

scVI

Algorithm Version

1.3.2

Algorithm URL

https://github.com/scverse/scvi-tools