HCA Gut Cell Atlas v1 Stromal Lineage

Main

Cell Metadata

vascular endothelial Capillary

Ontology Term: capillary endothelial cellCL:0002144
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: endothelial cellCL:0000115
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CD36, CLDN5, RAMP2, FLT1, IGFBP7
Canonical Marker Genes: CLDN5, RAMP2, FLT1
Rationale: CD36, CLDN5, RAMP2, FLT1 and IGFBP7, consistent with gut micro capillary networks described in human intestinal single cell atlases.

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: 1.3.2
Algorithm URL: https://github.com/scverse/scvi-tools

Main

Cell Metadata

Ontology Term: capillary endothelial cellCL:0002144
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: endothelial cellCL:0000115
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CD36, CLDN5, RAMP2, FLT1, IGFBP7
Canonical Marker Genes: CLDN5, RAMP2, FLT1
Rationale: CD36, CLDN5, RAMP2, FLT1 and IGFBP7, consistent with gut micro capillary networks described in human intestinal single cell atlases.

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: 1.3.2
Algorithm URL: https://github.com/scverse/scvi-tools