HCA Gut Cell Atlas v1 Stromal Lineage

Main

Cell Metadata

Pericytes Immature

Ontology Term: immature pericyteCL:4047007
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: pericyteCL:0000669
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: NDUFA4L2, PDGFRB, CSPG4
Canonical Marker Genes: PDGFRB, CSPG4, RGS5
Rationale: We identified these with NDUFA4L2, PDGFRB and CSPG4 expression. Not sure about the latter two.

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: 1.3.2
Algorithm URL: https://github.com/scverse/scvi-tools

Main

Cell Metadata

Ontology Term: immature pericyteCL:4047007
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: pericyteCL:0000669
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: NDUFA4L2, PDGFRB, CSPG4
Canonical Marker Genes: PDGFRB, CSPG4, RGS5
Rationale: We identified these with NDUFA4L2, PDGFRB and CSPG4 expression. Not sure about the latter two.

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: 1.3.2
Algorithm URL: https://github.com/scverse/scvi-tools