HCA Gut Cell Atlas v1 Epithelial Lineage

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Cell Metadata

Secretory Goblet Cells

Ontology Term: goblet cellCL:0000160
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: epithelial cellCL:0000066
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CLCA1, TFF3, MUC2, SPINK4, REG4, ITLN1, FXYD3
Canonical Marker Genes: MUC2, TFF3, SPINK4
Rationale: Intestinal goblet cells which produce mucus. These are easily found in scRNA data with MUC2, TFF3, and REG4

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: algorithmic

Ontology Term: goblet cellCL:0000160
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: epithelial cellCL:0000066
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CLCA1, TFF3, MUC2, SPINK4, REG4, ITLN1, FXYD3
Canonical Marker Genes: MUC2, TFF3, SPINK4
Rationale: Intestinal goblet cells which produce mucus. These are easily found in scRNA data with MUC2, TFF3, and REG4

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: algorithmic