HCA Gut Cell Atlas v1 Epithelial Lineage

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Cell Metadata

Follicle associated enterocyte (FAE)

Ontology Term: follicle associated enterocyteCL:4052011
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: epithelial cellCL:0000066
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CCL20, IL15, CCL25, ANPEP
Canonical Marker Genes: CCL20, GP2, RANK
Rationale: a high abundance of CCL genes and IL15 in absorptive epithelial subclusters points to a potentially follicle associated enterocyte group. CCL20 is the canonical marker for these, but isn't found in marker lists.

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: algorithmic

Ontology Term: follicle associated enterocyteCL:4052011
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: epithelial cellCL:0000066
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CCL20, IL15, CCL25, ANPEP
Canonical Marker Genes: CCL20, GP2, RANK
Rationale: a high abundance of CCL genes and IL15 in absorptive epithelial subclusters points to a potentially follicle associated enterocyte group. CCL20 is the canonical marker for these, but isn't found in marker lists.

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: algorithmic