HCA Gut Cell Atlas v1 Epithelial Lineage

Main

Cell Metadata

Colonocytes BEST4

Ontology Term: BEST4+ colonocyteCL:4047052
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: colonocyteCL:1000347
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: BEST4, SPIB, OTOP2, CA7
Canonical Marker Genes: BEST4, OTOP2, SPIB
Rationale: BEST4 is found to differentiate a subcluster of colonocytes across multiple gut epithelial datasets, and is often the only marker needed to identify this subset

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: algorithmic

Ontology Term: BEST4+ colonocyteCL:4047052
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: colonocyteCL:1000347
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: BEST4, SPIB, OTOP2, CA7
Canonical Marker Genes: BEST4, OTOP2, SPIB
Rationale: BEST4 is found to differentiate a subcluster of colonocytes across multiple gut epithelial datasets, and is often the only marker needed to identify this subset

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: algorithmic