HCA Gut Cell Atlas v1 Epithelial Lineage

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Cell Metadata

EEC Enterochromaffin Cells

Ontology Term: type EC enteroendocrine cellCL:0000577
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: enteroendocrine cellCL:0000164
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CHGA, TPH1, GULP1, IGFBP3
Canonical Marker Genes: TPH1, CHGA, TAC1
Rationale: EEC which produce primarily TPH1 and CHGA. TPH1 differentiates from broader EEC label

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: algorithmic

Ontology Term: type EC enteroendocrine cellCL:0000577
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: enteroendocrine cellCL:0000164
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CHGA, TPH1, GULP1, IGFBP3
Canonical Marker Genes: TPH1, CHGA, TAC1
Rationale: EEC which produce primarily TPH1 and CHGA. TPH1 differentiates from broader EEC label

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: algorithmic