HCA Gut Cell Atlas v1 Epithelial Lineage

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Cell Metadata

Enterocytes BEST4

Ontology Term: BEST4+ enterocyteCL:4030026
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: enterocyteCL:0000584
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: BEST4, OTOP2, KLK15, SPIB, CA7, CFTR
Canonical Marker Genes: BEST4, OTOP2, CA7
Rationale: A BEST4 enterocyte population is annotated for some clusters enriched in SI. These tend to have other antimicrobial/mucus regulating/ionic gradient enzymes upregulated as well

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: algorithmic

Ontology Term: BEST4+ enterocyteCL:4030026
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: enterocyteCL:0000584
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: BEST4, OTOP2, KLK15, SPIB, CA7, CFTR
Canonical Marker Genes: BEST4, OTOP2, CA7
Rationale: A BEST4 enterocyte population is annotated for some clusters enriched in SI. These tend to have other antimicrobial/mucus regulating/ionic gradient enzymes upregulated as well

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: algorithmic