HCA Gut Cell Atlas v1 Stromal Lineage

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Cell Metadata

vascular endothelial Venular

Ontology Term: vein endothelial cellCL:0002543
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: endothelial cellCL:0000115
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: ACKR1, VWF, SELP, MADCAM1, ADGRG6
Canonical Marker Genes: ACKR1, VWF, SELP
Rationale: Annotated by ACKR1 predominantly, these separate clearly from other vascular endothelial clusters

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: 1.3.2
Algorithm URL: https://github.com/scverse/scvi-tools

Ontology Term: vein endothelial cellCL:0002543
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: endothelial cellCL:0000115
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: ACKR1, VWF, SELP, MADCAM1, ADGRG6
Canonical Marker Genes: ACKR1, VWF, SELP
Rationale: Annotated by ACKR1 predominantly, these separate clearly from other vascular endothelial clusters

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: 1.3.2
Algorithm URL: https://github.com/scverse/scvi-tools