HCA Gut Cell Atlas v1 Stromal Lineage

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Cell Metadata

vascular endothelial Pre venule capillary (PVC)

Ontology Term: pre-venule capillary cellCL:4047030
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: capillary endothelial cellCL:0002144
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: LITAF, ICAM1
Canonical Marker Genes: ICAM1, LITAF, VCAM1
Rationale: Identified by LITAF and ICAM1 expression, consistent with pre venous capillary beds positioned before venules in intestinal microcirculation.

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: 1.3.2
Algorithm URL: https://github.com/scverse/scvi-tools

Ontology Term: pre-venule capillary cellCL:4047030
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: capillary endothelial cellCL:0002144
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: LITAF, ICAM1
Canonical Marker Genes: ICAM1, LITAF, VCAM1
Rationale: Identified by LITAF and ICAM1 expression, consistent with pre venous capillary beds positioned before venules in intestinal microcirculation.

Set of Labels Description: Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: 1.3.2
Algorithm URL: https://github.com/scverse/scvi-tools