HCA Gut Cell Atlas v1 Stromal Lineage

Pericytes Contractile

Full Name

contractile pericyte

Closest Ontology Term

pericyteCL:0000669

Synonyms

Terms that have the same, or nearly the same, meaning as the selected cell type.

unknown

Category

Class of which the cell type is a subclass.

pericyteCL:0000669

Ontology Assessment

Disagreements with any aspect of the Cell Ontology.

—

Marker Gene Evidence

Gene markers used by researcher to assign this cell annotation.

RERGL, NTRK2

Canonical Marker Genes

NTRK2, RERGL, ACTA2

Negative Marker Genes

Genes expected to be absent, or expressed at a notably low level, in these cells, and whose absence supports the assignment of this cell annotation.

—

Rationale

Defined by RERGL and NTRK2, suggesting a pericyte subset with enhanced contractile apparatus.

Inherited from Prelim annotation

Set of Labels Description

Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering

Annotation Method

both

Algorithm Name

scVI

Algorithm Version

1.3.2

Algorithm URL

https://github.com/scverse/scvi-tools