Human lymph nodes with partial T and B cell depletion

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Cell Metadata

ILC3

Ontology Term: group 3 innate lymphoid cell, humanCL:0001078
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: group 3 innate lymphoid cellCL:0001071
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: KIT, IL4I1, IL7R, CCR6, IL23R, AHR, RORC,
Canonical Marker Genes: IL7R, KLRB1, KIT, RORC, AHR
Rationale: Top differential gene expression mapped most with ILC3 (NKp44+ and NKp44-) in Azimuth tonsil dataset, low level NCR2 (NKp44) but similar to NK cells
Rationale DOI: https://doi.org/10.1038/ni.3368; DOI: 10.1016/j.celrep.2017.09.070

Set of Labels Description: Cell annotations were based on the finest possible label that could describe the 16 clusters found following integration and clustering.
Annotation Method: manual

Ontology Term: group 3 innate lymphoid cell, humanCL:0001078
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: group 3 innate lymphoid cellCL:0001071
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: KIT, IL4I1, IL7R, CCR6, IL23R, AHR, RORC,
Canonical Marker Genes: IL7R, KLRB1, KIT, RORC, AHR
Rationale: Top differential gene expression mapped most with ILC3 (NKp44+ and NKp44-) in Azimuth tonsil dataset, low level NCR2 (NKp44) but similar to NK cells
Rationale DOI: https://doi.org/10.1038/ni.3368; DOI: 10.1016/j.celrep.2017.09.070

Set of Labels Description: Cell annotations were based on the finest possible label that could describe the 16 clusters found following integration and clustering.
Annotation Method: manual