Human lymph nodes with partial T and B cell depletion

Main

Cell Metadata

Stromal_cells

Ontology Term: stromal cellCL:0000499
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: connective tissue cellCL:0002320
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CO1A2, COL3A1, CCL19, CXCL14, CLU, SOX5
Canonical Marker Genes: CO1A2, COL3A1, CCL19,
Rationale: Relative lack of PTPRC compared to other subsets, expression of collagens, SOX5 and PDPN (gp38)
Rationale DOI: https://doi.org/10.1038/s41556-022-00866-3; DOI: 10.1084/jem.20210790

Set of Labels Description: Cell annotations were based on the finest possible label that could describe the 16 clusters found following integration and clustering.
Annotation Method: manual

Main

Cell Metadata

Ontology Term: stromal cellCL:0000499
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: connective tissue cellCL:0002320
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CO1A2, COL3A1, CCL19, CXCL14, CLU, SOX5
Canonical Marker Genes: CO1A2, COL3A1, CCL19,
Rationale: Relative lack of PTPRC compared to other subsets, expression of collagens, SOX5 and PDPN (gp38)
Rationale DOI: https://doi.org/10.1038/s41556-022-00866-3; DOI: 10.1084/jem.20210790

Set of Labels Description: Cell annotations were based on the finest possible label that could describe the 16 clusters found following integration and clustering.
Annotation Method: manual