Cell Annotation Platform

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v1 LNCS: Atlas of healthy human lymph nodes with and without ex vivo adjuvant stimulation

Human lymph nodes with partial T and B cell depletion

Main

Cell Metadata

final annotation

pDC

Ontology Term: plasmacytoid dendritic cellCL:0000784
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: dendritic cellCL:0000451
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: HLA-DRA, CD74, IL3RA, LILRA4

Human lymph nodes with partial T and B cell depletion | CAP

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Canonical Marker Genes

IL3RA, TCF4, IRF4,

Rationale

This cell type was annotated given expression of canoncial markers, including a known expression of GZMB

Inherited from final annotation

Set of Labels Description: Cell annotations were based on the finest possible label that could describe the 16 clusters found following integration and clustering.
Annotation Method: manual

Human lymph nodes with partial T and B cell depletion