Massier 2023 — abdominal subcutaneous and omental adipose tissue

Main

Cell Metadata

Myeloid

Ontology Term: myeloid cellCL:0000763
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: hematopoietic cellCL:0000988
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: MRC1, TREM2, CD1C, FCGR3A, ITGAX, FN1, C1QA, MSR1, S100A8, HMOX1
Canonical Marker Genes: MRC1, TREM2, CD1C, FCGR3A, ITGAX, FN1, C1QA, MSR1, S100A8, HMOX1
Rationale: Cell annotation markers for each cluster, selected by high-medium confidence (PMID: 35480482 (MRC1), 31257031 (TREM2), 33101275 (CD1c), 21653326 (FCGR3A), 25035950 (ITGAX), 35202577 (FN1), 34331874 & 35288093 (C1QA), 32066456 (MSR1), 21653326 (S100A8), 25600948 (HMOX)). Supplementary Table 2: Confidence score and references for cluster assignment.

Set of Labels Description: Annotation of cell types included in dataset based on prior knowledge & gene expression data. Supplementary Table 2 of publication.
Annotation Method: manual

Ontology Term: myeloid cellCL:0000763
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: hematopoietic cellCL:0000988
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: MRC1, TREM2, CD1C, FCGR3A, ITGAX, FN1, C1QA, MSR1, S100A8, HMOX1
Canonical Marker Genes: MRC1, TREM2, CD1C, FCGR3A, ITGAX, FN1, C1QA, MSR1, S100A8, HMOX1
Rationale: Cell annotation markers for each cluster, selected by high-medium confidence (PMID: 35480482 (MRC1), 31257031 (TREM2), 33101275 (CD1c), 21653326 (FCGR3A), 25035950 (ITGAX), 35202577 (FN1), 34331874 & 35288093 (C1QA), 32066456 (MSR1), 21653326 (S100A8), 25600948 (HMOX)). Supplementary Table 2: Confidence score and references for cluster assignment.

Set of Labels Description: Annotation of cell types included in dataset based on prior knowledge & gene expression data. Supplementary Table 2 of publication.
Annotation Method: manual