Summary
We retrieved scRNA-seq, snRNA-seq and spatial transcriptomic (STx) results from ten published reports comprising samples from subcutaneous, visceral, and perivascular white adipose tissue. We combined this with four additional cohorts (Massier et al. #1–4), resulting in a total of 17 datasets across studies and depots.
Here, we present only the data from the Massier et al. #1–4.
Metadata
- Dataset Type
- Single. The file includes a single dataset whereby “dataset” means a single library or a set of technical replicates that can be combined without having to worry about the associated batch effect.
- Total Cells
- 38,081
- organism
- Homo sapiens
- assay
- 10x 3' v3
- tissue
- subcutaneous abdominal adipose tissue (22,979 cells)visceral abdominal adipose tissue (15,102 cells)
- disease
- morbid obesity (27,247 cells)obesity disorder (10,834 cells)
Cell Labels
Description
Annotation of cell types included in dataset based on prior knowledge & gene expression data. Supplementary Table 2 of publication.
Annotation Method
manual
