Massier 2023 — abdominal subcutaneous and omental adipose tissue

Main

Cell Metadata

Lymphoid

Ontology Term: lymphocyteCL:0000542
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: leukocyteCL:0000738
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CD4, CD8, NCAM1, FCG3RA, IL2RA
Canonical Marker Genes: CD4, CD8, NCAM1, FCG3RA, IL2RA
Rationale: Cell annotation markers for each cluster, selected by high-medium confidence (PMID: 34193602 & 34671115 & 30559746 & 28280496 (CD4), 35677061 (CD8), 11359797 & 11698225 (NCAM1), 11698225 (FCG3RA), 26122357 (IL2RA)). Supplementary Table 2: Confidence score and references for cluster assignment.

Set of Labels Description: Annotation of cell types included in dataset based on prior knowledge & gene expression data. Supplementary Table 2 of publication.
Annotation Method: manual

Ontology Term: lymphocyteCL:0000542
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: leukocyteCL:0000738
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CD4, CD8, NCAM1, FCG3RA, IL2RA
Canonical Marker Genes: CD4, CD8, NCAM1, FCG3RA, IL2RA
Rationale: Cell annotation markers for each cluster, selected by high-medium confidence (PMID: 34193602 & 34671115 & 30559746 & 28280496 (CD4), 35677061 (CD8), 11359797 & 11698225 (NCAM1), 11698225 (FCG3RA), 26122357 (IL2RA)). Supplementary Table 2: Confidence score and references for cluster assignment.

Set of Labels Description: Annotation of cell types included in dataset based on prior knowledge & gene expression data. Supplementary Table 2 of publication.
Annotation Method: manual