Lazarescu 2025 — abdominal visceral adipose tissue

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Cell Metadata

endothelial cell of lymphatic vessel

Ontology Term: endothelial cell of lymphatic vesselCL:0002138
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: LEC, lymphatic endothelial cell
Category Class of which the cell type is a subclass.: endothelial cellCL:0000115
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: FLT4
Canonical Marker Genes: FLT4
Rationale: Cell subsets were annotated using known markers from the literature (such as ADIPOQ and AQP7 for adipocytes), expert knowledge and CellTypist R package v.2. Detailed description of the annotation of nonadipocytes appears in PMID 39071890. Fig 1c of publication.

Set of Labels Description: Cell subsets were annotated using known markers from the literature (such as ADIPOQ and AQP7 for adipocytes), expert knowledge and CellTypist R package v.2. Detailed description of the annotation of nonadipocytes appears in PMID 39071890.
Annotation Method: both
Algorithm Name: CellTypist R package
Algorithm Version: 2
Algorithm URL: https://www.cell.com/cell/fulltext/S0092-8674(23)01312-0

Ontology Term: endothelial cell of lymphatic vesselCL:0002138
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: LEC, lymphatic endothelial cell
Category Class of which the cell type is a subclass.: endothelial cellCL:0000115
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: FLT4
Canonical Marker Genes: FLT4
Rationale: Cell subsets were annotated using known markers from the literature (such as ADIPOQ and AQP7 for adipocytes), expert knowledge and CellTypist R package v.2. Detailed description of the annotation of nonadipocytes appears in PMID 39071890. Fig 1c of publication.

Set of Labels Description: Cell subsets were annotated using known markers from the literature (such as ADIPOQ and AQP7 for adipocytes), expert knowledge and CellTypist R package v.2. Detailed description of the annotation of nonadipocytes appears in PMID 39071890.
Annotation Method: both
Algorithm Name: CellTypist R package
Algorithm Version: 2
Algorithm URL: https://www.cell.com/cell/fulltext/S0092-8674(23)01312-0