Human intercostal skeletal muscle aging atlas (scRNA-seq and snRNA-seq, young vs aged)

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Cell Metadata

CapEC

Ontology Term: capillary endothelial cellCL:0002144
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: capillary EC, microvascular endothelial cell
Category Class of which the cell type is a subclass.: endothelial cellCL:0000115
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CA4, RGCC, FABP4
Canonical Marker Genes: CA4, RGCC, KDR
Rationale: This cell was annotated manually using canonical markers in the field (CA4, RGCC, FABP4). We noticed GPIHBP1, CLDN5, FABP4 running differential expression. Capillary microvasculature endothelium.
Rationale DOI: 10.1038/s41591-024-03376-x

Set of Labels Description: Displayed cell annotations represent 43 coarse cell type clusters derived using combined manual and automatic annotation using CellTypist.
Annotation Method: both
Algorithm Name: CellTypist
Algorithm Version: v1.7
Algorithm URL: https://github.com/Teichlab/celltypist

Ontology Term: capillary endothelial cellCL:0002144
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: capillary EC, microvascular endothelial cell
Category Class of which the cell type is a subclass.: endothelial cellCL:0000115
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CA4, RGCC, FABP4
Canonical Marker Genes: CA4, RGCC, KDR
Rationale: This cell was annotated manually using canonical markers in the field (CA4, RGCC, FABP4). We noticed GPIHBP1, CLDN5, FABP4 running differential expression. Capillary microvasculature endothelium.
Rationale DOI: 10.1038/s41591-024-03376-x

Set of Labels Description: Displayed cell annotations represent 43 coarse cell type clusters derived using combined manual and automatic annotation using CellTypist.
Annotation Method: both
Algorithm Name: CellTypist
Algorithm Version: v1.7
Algorithm URL: https://github.com/Teichlab/celltypist