Human intercostal skeletal muscle aging atlas (scRNA-seq and snRNA-seq, young vs aged)

Main

Cell Metadata

MF-I

Ontology Term: slow muscle cellCL:0000189
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: slow-twitch myofiber, type I fiber, MYH7+ myofiber, red fiber
Category Class of which the cell type is a subclass.: skeletal muscle fiberCL:0008002
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: MYH7, TNNT1, MB
Canonical Marker Genes: MYH7, TNNT1, MYL2
Rationale: This cell was annotated manually using canonical slow-twitch myofiber markers in the field (MYH7, TNNT1, MB).
Rationale DOI: 10.1038/s41467-020-18789-8 10.1038/s41467-020-20064-9 10.1038/s41467-020-20063-w 10.1016/j.celrep.2017.05.054 10.1186/s13395-015-0046-6

Set of Labels Description: Displayed cell annotations represent 43 coarse cell type clusters derived using combined manual and automatic annotation using CellTypist.
Annotation Method: both
Algorithm Name: CellTypist
Algorithm Version: v1.7
Algorithm URL: https://github.com/Teichlab/celltypist

Ontology Term: slow muscle cellCL:0000189
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: slow-twitch myofiber, type I fiber, MYH7+ myofiber, red fiber
Category Class of which the cell type is a subclass.: skeletal muscle fiberCL:0008002
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: MYH7, TNNT1, MB
Canonical Marker Genes: MYH7, TNNT1, MYL2
Rationale: This cell was annotated manually using canonical slow-twitch myofiber markers in the field (MYH7, TNNT1, MB).
Rationale DOI: 10.1038/s41467-020-18789-8 10.1038/s41467-020-20064-9 10.1038/s41467-020-20063-w 10.1016/j.celrep.2017.05.054 10.1186/s13395-015-0046-6

Set of Labels Description: Displayed cell annotations represent 43 coarse cell type clusters derived using combined manual and automatic annotation using CellTypist.
Annotation Method: both
Algorithm Name: CellTypist
Algorithm Version: v1.7
Algorithm URL: https://github.com/Teichlab/celltypist