Human breast and milk cell atlas

• v1 Transcriptional changes in the mammary gland during lactation revealed by single cell sequencing of cells from human milk

Summary

Metadata

Dataset Type

Integrated. The file includes an integrated collection of datasets.

Total Cells

110,744

assay

10x 3' v3 (93,395 cells)10x 3' v2 (17,349 cells)

disease

normal

organism

Homo sapiens

tissue

breast

Cell Labels

original_celltype

Description

Cell annotations based on broad clustering using Louvain clustering and canonical gene expression. Sub clustering was interrogated and robustness of clusters were investigated within samples as well as between clusters.

Annotation Method

both

Cell Labels (9)

Cells (110,744)

Luminal Cluster 1 (LC1)

36,915

Luminal Cluster 2 (LC2)

17,229

Luminal Progenitor (LP)

15,744

Myoepithelial cell (MY)

12,348

Hormone Responsive (HR)

11,187

Immune (IM)

6,310

Vascular Accessory (VA)

5,271

Endothelial (EN)

3,240

Fibroblast (FB)

2,500