All cells from human liver dataset

Main

Cell Metadata

cDC1s

Full Name: conventional type 1 dendritic cell
Closest Ontology Term: conventional dendritic cellCL:0000990
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: cDC1, DC1
Category Class of which the cell type is a subclass.: dendritic cellCL:0000451
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CLEC9A, TACSTD2, IDO1, WDFY4, C1orf54, HLA-DOB, CLNK, CPVL, EGLN3, DNASE1L3
Canonical Marker Genes: XCR1, IRF8, CLEC9A
Rationale: Marker genes are top 10 DEGs for these cells compared with rest of UMAP (from Table S1 in publication).

Set of Labels Description: Annotation of cells in dataset based on prior knowledge.
Annotation Method: manual

Full Name: conventional type 1 dendritic cell
Closest Ontology Term: conventional dendritic cellCL:0000990
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: cDC1, DC1
Category Class of which the cell type is a subclass.: dendritic cellCL:0000451
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CLEC9A, TACSTD2, IDO1, WDFY4, C1orf54, HLA-DOB, CLNK, CPVL, EGLN3, DNASE1L3
Canonical Marker Genes: XCR1, IRF8, CLEC9A
Rationale: Marker genes are top 10 DEGs for these cells compared with rest of UMAP (from Table S1 in publication).

Set of Labels Description: Annotation of cells in dataset based on prior knowledge.
Annotation Method: manual