All cells from human liver dataset

Main

Cell Metadata

Cholangiocytes

Ontology Term: cholangiocyteCL:1000488
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: bile duct epithelial cell
Category Class of which the cell type is a subclass.: branched duct epithelial cellCL:0000069
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: DCDC2, SCGN, CFTR, BICC1, ITGB8, KRT19, CTNND2, CLDN10, KRT7, SNAP25
Canonical Marker Genes: DCDC2, BICC1
Rationale: Marker genes are the top 10 DEGs for this population compared with rest of UMAP (from Table S1 in publication).

Set of Labels Description: Annotation of cells in dataset based on prior knowledge.
Annotation Method: manual

Main

Cell Metadata

Ontology Term: cholangiocyteCL:1000488
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: bile duct epithelial cell
Category Class of which the cell type is a subclass.: branched duct epithelial cellCL:0000069
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: DCDC2, SCGN, CFTR, BICC1, ITGB8, KRT19, CTNND2, CLDN10, KRT7, SNAP25
Canonical Marker Genes: DCDC2, BICC1
Rationale: Marker genes are the top 10 DEGs for this population compared with rest of UMAP (from Table S1 in publication).

Set of Labels Description: Annotation of cells in dataset based on prior knowledge.
Annotation Method: manual