All cells from human liver dataset

Main

Cell Metadata

Basophils

Ontology Term: basophilCL:0000767
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: granulocyteCL:0000094
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: TPSAB1, CMA1, CPA3, RP11-354E11.2, CTSG, MS4A2, GATA2, HPGDS, GSTM5, HDC
Canonical Marker Genes: KIT, HDC
Rationale: Marker genes are top 10 DEGs for this population compared with rest of UMAP (from Table S1 in publication). Note some genes are also expressed by Mast cells thus the true nature of this population is still to be determined.

Set of Labels Description: Annotation of cells in dataset based on prior knowledge.
Annotation Method: manual

Ontology Term: basophilCL:0000767
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: granulocyteCL:0000094
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: TPSAB1, CMA1, CPA3, RP11-354E11.2, CTSG, MS4A2, GATA2, HPGDS, GSTM5, HDC
Canonical Marker Genes: KIT, HDC
Rationale: Marker genes are top 10 DEGs for this population compared with rest of UMAP (from Table S1 in publication). Note some genes are also expressed by Mast cells thus the true nature of this population is still to be determined.

Set of Labels Description: Annotation of cells in dataset based on prior knowledge.
Annotation Method: manual