Single-nucleus transcriptomic profiling of human skeletal muscle from healthy adults

Pericyte

Ontology Term

pericyteCL:0000669

Synonyms

Terms that have the same, or nearly the same, meaning as the selected cell type.

unknown

Category

Class of which the cell type is a subclass.

connective tissue cellCL:0002320

Ontology Assessment

Disagreements with any aspect of the Cell Ontology.

—

Marker Gene Evidence

Gene markers used by researcher to assign this cell annotation.

PDGFRB, RGS5, ACTA2, TAGLN, DLC1, CALD1

Canonical Marker Genes

CPM, EPS8, FRMD3, MYO1B, PDGFRB, RGS5

Rationale

This cluster was annotated as pericytes due to strong expression of mural and perivascular markers PDGFRB, DLC1, CALD1, ARHGAP10, EPS8, and TACC1.

Inherited from author_cell_type

Set of Labels Description

Cell annotations were generated with scType using marker genes curated from related publications, and then manually reviewed and adjusted based on the top highly variable genes in each Leiden cluster.

Annotation Method

both

Algorithm Name

scType

Algorithm Version

v1

Algorithm URL

https://github.com/IanevskiAleksandr/sc-type