HCA Gut Cell Atlas v1 Myeloid Lineage

Main

Cell Metadata

Summary

Healthy and adjacent-to-disease control data from 27 gut single-cell RNAseq datasets were collected and integrated to form v1 of the Human Gut Cell Atlas myeloid lineage

Metadata

Dataset Type: Integrated. The file includes an integrated collection of datasets.
Total Cells: 52,311
organism: Homo sapiens
assay: 10x 3' v3 (33,192 cells)10x 3' v2 (13,476 cells)10x 5' v1 (2,987 cells)10x 5' v2 (2,618 cells)10X 5' v3 (38 cells)
disease: normal (34,496 cells)Crohn disease (12,523 cells)Abnormality of the gastrointestinal tract (3,460 cells)colorectal cancer (1,462 cells)

Summary

Healthy and adjacent-to-disease control data from 27 gut single-cell RNAseq datasets were collected and integrated to form v1 of the Human Gut Cell Atlas myeloid lineage

Metadata

Dataset Type: Integrated. The file includes an integrated collection of datasets.
Total Cells: 52,311
organism: Homo sapiens
assay: 10x 3' v3 (33,192 cells)10x 3' v2 (13,476 cells)10x 5' v1 (2,987 cells)10x 5' v2 (2,618 cells)10X 5' v3 (38 cells)
disease: normal (34,496 cells)Crohn disease (12,523 cells)Abnormality of the gastrointestinal tract (3,460 cells)colorectal cancer (1,462 cells)

tissue

ileum (24,899 cells)jejunum (17,322 cells)colon (5,690 cells)caecum (1,036 cells)transverse colon (972 cells)rectum (878 cells)sigmoid colon (803 cells)duodenum (519 cells)gastrointestinal system mesentery (84 cells)descending colon (52 cells)vermiform appendix (34 cells)small intestine (22 cells)

Prelim annotation

Description

Cell annotations (Prelim annotation) are based on the finest possible label that could be used to describe each of the ~500 clusters found during integration and subclustering

Annotation Method

both